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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_62536727_62537521_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
62536727 - 62537521
Intron Length:
795

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTTTAA
5'SS Class:
major
3'SS Sequence:
TTCCACACTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTTAC
U12 Branch Point Sequence:
TTTTTCCACACT
Flanking Amino Acid:
ADSILFLCSPSVMNLDDLTR
Intron Amino Acid Position:
258

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
73.2
33.8
Major BPS
64.9
0.37
0.9
55.4
32.3
Major PPT
73.8
0.53
0.9
66.7
33.7
Minor 5ss
38.5
-1.3
3
49.6
46.6
Minor BPS
48.6
-0
2.4
79.84
42.4

Associated Gene:

Gene:
GUCY1B1
Ensembl Gene ID:
ENSAPLG00000011190
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011675
62520297 - 62544838
24542
ENSAPLT00000048471
62520297 - 62544903
24607