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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_62540885_62541470_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
62540885 - 62541470
Intron Length:
586

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
CTTTCAATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TCTCTTTCAATT
Flanking Amino Acid:
GKINVSEYTYRCLMTPENSD
Intron Amino Acid Position:
502

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
77.5
32.9
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
81.8
0.71
0.8
78.5
33.5
Minor 5ss
26.6
-2.7
3
30.5
43.3
Minor BPS
57.6
0.32
1.5
72.72
39

Associated Gene:

Gene:
GUCY1B1
Ensembl Gene ID:
ENSAPLG00000011190
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011675
62520297 - 62544838
24542
ENSAPLT00000048471
62520297 - 62544903
24607