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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_62576081_62576643_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62576081 - 62576643
Intron Length:
563

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCACC
5'SS Class:
strong_major
3'SS Sequence:
TATTACTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTATTATTACTT
Flanking Amino Acid:
HAQVAIRQLKSIIQEYPWGE
Intron Amino Acid Position:
278

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.9
78.8
35.5
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
83.6
0.76
0.8
76.9
36.7
Minor 5ss
40.6
-1
2.8
52.8
44.1
Minor BPS
56.3
0.28
1.8
77.4
39.3

Associated Gene:

Gene:
ASIC5
Ensembl Gene ID:
ENSAPLG00000011784
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028292
62565811 - 62584567
18757
ENSAPLT00000012267
62565811 - 62583842
18032