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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_62580827_62584506_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
62580827 - 62584506
Intron Length:
3680

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAACCAC
5'SS Class:
major
3'SS Sequence:
GTTCAATATTAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTGTTCAATA
Flanking Amino Acid:
LLDQHSQKAVGKLEKIRLYL
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.3
0.38
1
54.4
38.7
Major BPS
100
1.24
0.5
100
0
Major PPT
59.5
0.21
1.2
61.7
42.8
Minor 5ss
32.2
-2
3.1
38
41.5
Minor BPS
58.7
0.27
1.9
75.09
37.1

Associated Gene:

Gene:
ASIC5
Ensembl Gene ID:
ENSAPLG00000011784
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028292
62565811 - 62584567
18757