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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_62591430_62592627_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62591430 - 62592627
Intron Length:
1198

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTTCGTAAT
5'SS Class:
major
3'SS Sequence:
TTTCATTTTTAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATAGCCTTATTT
Flanking Amino Acid:
NLNKILNAQEL
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.8
0.35
1.3
72.3
38.7
Major BPS
100
1.24
0.5
100
0
Major PPT
78.7
0.65
1
83.1
31.9
Minor 5ss
35.1
-1.7
3
48.1
40.8
Minor BPS
60.7
0.41
1.7
75.08
42

Associated Gene:

Gene:
TDO2
Ensembl Gene ID:
ENSAPLG00000012137
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012648
62591427 - 62602778
11352