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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_62593674_62595367_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62593674 - 62595367
Intron Length:
1694

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTATTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TATTTTTTATTA
Flanking Amino Acid:
SVRVIFQNGHVRDERNMLKV
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
1
76.2
34.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
75.2
0.57
1.1
80.5
35.8
Minor 5ss
36
-1.6
3
45.7
42.5
Minor BPS
62.8
0.4
1.5
71.52
35

Associated Gene:

Gene:
TDO2
Ensembl Gene ID:
ENSAPLG00000012137
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031358
62590255 - 62602778
12524
ENSAPLT00000023989
62592248 - 62602778
10531
ENSAPLT00000012648
62591427 - 62602778
11352