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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_62595496_62597310_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
62595496 - 62597310
Intron Length:
1815

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATACT
5'SS Class:
strong_major
3'SS Sequence:
TCTACTCCCCAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATAATAT
U12 Branch Point Sequence:
TTCTCTTCTACT
Flanking Amino Acid:
TMTALDFFDFRDYLSPASGF
Intron Amino Acid Position:
98

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
86.8
27.8
Major BPS
58.7
0.22
1.1
55.4
40
Major PPT
63.1
0.29
1
60.5
35.5
Minor 5ss
37.7
-1.4
2.9
52.3
44.3
Minor BPS
59.3
0.37
1.9
80.15
41.9

Associated Gene:

Gene:
TDO2
Ensembl Gene ID:
ENSAPLG00000012137
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031358
62590255 - 62602778
12524
ENSAPLT00000023989
62592248 - 62602778
10531
ENSAPLT00000012648
62591427 - 62602778
11352