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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_62598908_62599863_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62598908 - 62599863
Intron Length:
956

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TTAAATATTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTTGCTTTAAAT
Flanking Amino Acid:
GLEEEFAIVQAKPESEEKED
Intron Amino Acid Position:
197

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1.1
83
36.1
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
62.2
0.27
1.2
60.9
43.3
Minor 5ss
33.8
-1.8
2.6
43.7
43.3
Minor BPS
74.7
0.85
1.4
88.96
35.8

Associated Gene:

Gene:
TDO2
Ensembl Gene ID:
ENSAPLG00000012137
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012648
62591427 - 62602778
11352
ENSAPLT00000031358
62590255 - 62602778
12524
ENSAPLT00000023989
62592248 - 62602778
10531