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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_62599976_62600087_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
62599976 - 62600087
Intron Length:
112

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTGTATTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
TTGTATTTTACA
Flanking Amino Acid:
EKRHEHLLSKGERRLSYKAL
Intron Amino Acid Position:
234

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
79.4
29.7
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
85.7
0.8
0.8
80.1
37.1
Minor 5ss
46.6
-0.4
2.4
59.3
45.3
Minor BPS
58.1
0.25
1.8
71.98
40

Associated Gene:

Gene:
TDO2
Ensembl Gene ID:
ENSAPLG00000012137
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031358
62590255 - 62602778
12524
ENSAPLT00000023989
62592248 - 62602778
10531
ENSAPLT00000012648
62591427 - 62602778
11352