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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_62600146_62600663_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
62600146 - 62600663
Intron Length:
518

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGCTA
5'SS Class:
major
3'SS Sequence:
TTCATTTTCCAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TCCTCTTTCATT
Flanking Amino Acid:
LKGALMIYFYREEPRFQVPF
Intron Amino Acid Position:
253

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
71.5
39.9
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
71.6
0.49
1
70.9
38.8
Minor 5ss
34.4
-1.8
3.4
47.6
47.8
Minor BPS
60.8
0.42
1.7
74.65
43.4

Associated Gene:

Gene:
TDO2
Ensembl Gene ID:
ENSAPLG00000012137
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031358
62590255 - 62602778
12524
ENSAPLT00000023989
62592248 - 62602778
10531
ENSAPLT00000012648
62591427 - 62602778
11352