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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_62601416_62602624_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
62601416 - 62602624
Intron Length:
1209

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAATA
5'SS Class:
strong_major
3'SS Sequence:
TTATCTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
ATTGTTTCAATT
Flanking Amino Acid:
SGYHYLRSTVSDRYKVFVDL
Intron Amino Acid Position:
310

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.1
1.04
0.7
89.9
22.1
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
89.9
0.9
0.7
88.6
28.1
Minor 5ss
37.1
-1.5
3
48.8
46.9
Minor BPS
56.4
0.28
1.6
73.56
38.2

Associated Gene:

Gene:
TDO2
Ensembl Gene ID:
ENSAPLG00000012137
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031358
62590255 - 62602778
12524
ENSAPLT00000023989
62592248 - 62602778
10531
ENSAPLT00000012648
62591427 - 62602778
11352