About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_62606643_62608735_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
62606643 - 62608735
Intron Length:
2093

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTACT
5'SS Class:
strong_major
3'SS Sequence:
ACTTCTTTCGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAC
U12 Branch Point Sequence:
CTAACTTTAACT
Flanking Amino Acid:
SITGFAAYDFSGQEEEMMRM
Intron Amino Acid Position:
258

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
1.1
84.4
33.5
Major BPS
78.3
0.7
1
80
32.1
Major PPT
81.5
0.71
0.8
76.6
31.3
Minor 5ss
43.9
-0.7
2.6
61.4
42.9
Minor BPS
73.2
0.81
1.3
81.47
40.1

Associated Gene:

Gene:
CTSO
Ensembl Gene ID:
ENSAPLG00000012445
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012960
62605272 - 62613393
8122