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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_62608858_62610322_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62608858 - 62610322
Intron Length:
1465

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGAAAC
5'SS Class:
major
3'SS Sequence:
TCTCTTATTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTCTCATTCATT
Flanking Amino Acid:
TISALSWLNQTKVKLVRDSE
Intron Amino Acid Position:
218

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.2
68.9
35.6
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
85.9
0.81
0.8
81
29.3
Minor 5ss
36.2
-1.6
2.7
43.5
43.8
Minor BPS
58.9
0.36
2
80.74
41.5

Associated Gene:

Gene:
CTSO
Ensembl Gene ID:
ENSAPLG00000012445
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012960
62605272 - 62613393
8122