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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_62617876_62627519_F

Intron Information:

Intron Rank:
143136
Intron Class:
major
Intron Phase:
Intron Coordinates:
62617876 - 62627519
Intron Length:
9644

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTATCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
TTTTTCCTATCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
1.2
87
30
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
77.8
0.63
0.8
73.4
30
Minor 5ss
32.8
-2
2.7
42.5
44.3
Minor BPS
61.6
0.36
1.9
79.7
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027118
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025891
62617243 - 62627988
10746