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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_62627713_62670068_F

Intron Information:

Intron Rank:
143137
Intron Class:
major
Intron Phase:
Intron Coordinates:
62627713 - 62670068
Intron Length:
42356

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGATTA
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATGAG
U12 Branch Point Sequence:
GCCAAGGTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
79.5
29.5
Major BPS
51.9
0.05
1.6
51.5
43.9
Major PPT
86
0.81
0.7
85.1
29.7
Minor 5ss
47.6
-0.2
2.8
64.6
46.8
Minor BPS
38.1
-0.8
2.5
53.89
47.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027118
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027976
62627380 - 62672547
45168