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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_62627713_62691834_F

Intron Information:

Intron Rank:
143140
Intron Class:
major
Intron Phase:
Intron Coordinates:
62627713 - 62691834
Intron Length:
64122

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGATTA
5'SS Class:
strong_major
3'SS Sequence:
CTTTACATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
AAGTTCTTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
79.5
29.5
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
80.7
0.69
0.9
74.2
34.8
Minor 5ss
47.6
-0.2
2.8
64.6
46.8
Minor BPS
75.3
0.79
1.1
74.67
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027118
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037294
62627380 - 62720050
92671