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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_62670135_62672390_F

Intron Information:

Intron Rank:
143138
Intron Class:
major
Intron Phase:
Intron Coordinates:
62670135 - 62672390
Intron Length:
2256

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
TCTTGCCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAC
U12 Branch Point Sequence:
TCTTCTTTACCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
75.9
39.9
Major BPS
74
0.6
1
65.6
41.1
Major PPT
83.2
0.75
0.8
76.4
32.4
Minor 5ss
41.5
-0.9
2.8
57.1
41.1
Minor BPS
71
0.66
1.6
78.6
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027118
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027976
62627380 - 62672547
45168