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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_62692009_62719877_F

Intron Information:

Intron Rank:
143141
Intron Class:
major
Intron Phase:
Intron Coordinates:
62692009 - 62719877
Intron Length:
27869

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TAAATTTTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
AAACATTTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.8
79.3
28.9
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
78.5
0.64
1
69.8
45.3
Minor 5ss
30.7
-2.2
2.6
33.5
35.6
Minor BPS
50.5
0.09
1.6
64.93
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027118
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037294
62627380 - 62720050
92671