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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_62709072_62732354_R

Intron Information:

Intron Rank:
142907
Intron Class:
major
Intron Phase:
Intron Coordinates:
62709072 - 62732354
Intron Length:
23283

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATCCCATTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
74.9
36.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
92.5
0.96
0.7
87.5
30
Minor 5ss
51.5
0.05
2.3
61.4
43.6
Minor BPS
63.7
0.51
1.6
77.24
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024205
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022544
62708556 - 62732530
23975