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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_62861454_62862798_F

Intron Information:

Intron Rank:
138354
Intron Class:
major
Intron Phase:
Intron Coordinates:
62861454 - 62862798
Intron Length:
1345

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
CTTTATTTTATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
AATTCTTAAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.8
81.8
38.5
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
84.8
0.78
0.7
80.1
31.6
Minor 5ss
37.8
-1.4
3
49.5
46.7
Minor BPS
69.8
0.7
1.6
83.43
37.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024445
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047715
62861318 - 62863851
2534