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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_62933893_62934580_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62933893 - 62934580
Intron Length:
688

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGCACT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAC
U12 Branch Point Sequence:
GTTCTCTTGACG
Flanking Amino Acid:
PTKVTKKYHEVLQLKPRTGV
Intron Amino Acid Position:
308

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
77.1
37.8
Major BPS
73.9
0.59
1
65.3
41.6
Major PPT
90.5
0.91
0.6
89
20.2
Minor 5ss
48.1
-0.2
2.5
67.2
43.7
Minor BPS
67.2
0.4
1.3
68.71
38.5

Associated Gene:

Gene:
PDGFC
Ensembl Gene ID:
ENSAPLG00000012486
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031426
62933776 - 62983252
49477
ENSAPLT00000013011
62932790 - 63050312
117523
ENSAPLT00000046378
62933776 - 63021100
87325
ENSAPLT00000043870
62933776 - 63032263
98488
ENSAPLT00000043690
62933776 - 63014966
81191