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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_62940479_62964091_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62940479 - 62964091
Intron Length:
23613

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTAAC
5'SS Class:
major
3'SS Sequence:
GCTTTGATTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
TTGGCTTTGATT
Flanking Amino Acid:
FCIHYTLLVPHHTEAPSPSL
Intron Amino Acid Position:
166

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
75.5
34.3
Major BPS
84
0.85
0.9
75
39.9
Major PPT
76.7
0.6
1
69.7
40.3
Minor 5ss
38.2
-1.3
2.8
51.4
39.2
Minor BPS
65.8
0.58
1.4
78.01
39.5

Associated Gene:

Gene:
PDGFC
Ensembl Gene ID:
ENSAPLG00000012486
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013011
62932790 - 63050312
117523
ENSAPLT00000046378
62933776 - 63021100
87325
ENSAPLT00000043870
62933776 - 63032263
98488
ENSAPLT00000043690
62933776 - 63014966
81191
ENSAPLT00000031426
62933776 - 62983252
49477