About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_62964273_62981035_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
62964273 - 62981035
Intron Length:
16763

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTGTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
TTACCAGTAAAT
Flanking Amino Acid:
GLEDPEDDICKYDFVEVEEP
Intron Amino Acid Position:
105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
86.9
22.7
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
85.3
0.8
0.8
84.4
30.5
Minor 5ss
45.5
-0.5
2.8
58.5
40.4
Minor BPS
47.5
-0.1
2.3
73.39
42.5

Associated Gene:

Gene:
PDGFC
Ensembl Gene ID:
ENSAPLG00000012486
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013011
62932790 - 63050312
117523
ENSAPLT00000046378
62933776 - 63021100
87325
ENSAPLT00000043870
62933776 - 63032263
98488
ENSAPLT00000043690
62933776 - 63014966
81191
ENSAPLT00000031426
62933776 - 62983252
49477