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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_62981232_62983221_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
62981232 - 62983221
Intron Length:
1990

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATTTGG
5'SS Class:
major
3'SS Sequence:
CTCTTTATTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TCTCTCTTTATT
Flanking Amino Acid:
MKCLLCREIQGVQDPQHEKI
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.69
1
67.7
40.1
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
81.4
0.71
0.8
77.4
29.8
Minor 5ss
34.2
-1.8
2.8
41.1
45.2
Minor BPS
61.3
0.44
1.6
76.71
40

Associated Gene:

Gene:
PDGFC
Ensembl Gene ID:
ENSAPLG00000012486
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031426
62933776 - 62983252
49477