Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_62981232_63021027_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

62981232 - 63021027

Intron Length:

39796

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGCCCTGA

5'SS Class:

weak_major

3'SS Sequence:

CTCTTTATTGTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTTTAT

U12 Branch Point Sequence:

TCTCTCTTTATT

Flanking Amino Acid:

LSSPWTALISGVQDPQHEKI

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

61.2

0.26

1.2

53.1

42.7

Major BPS

83.9

0.84

73.9

41.3

Major PPT

81.4

0.71

0.8

77.4

29.8

Minor 5ss

42.2

-0.9

3.1

56.3

47.8

Minor BPS

61.3

0.44

1.6

76.71

Associated Gene:

Gene:

PDGFC

Ensembl Gene ID:

ENSAPLG00000012486

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046378

62933776 - 63021100

87325