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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_63155875_63194494_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
63155875 - 63194494
Intron Length:
38620

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTGAGTACC
5'SS Class:
major
3'SS Sequence:
TTTTCCCTCTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAAAAAT
U12 Branch Point Sequence:
TCCCACCTAACT
Flanking Amino Acid:
VANSFAVTNAFCSQFSRGVF
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.1
68.2
36.6
Major BPS
54
0.1
1
59.7
32.6
Major PPT
82.7
0.74
0.6
81.8
23
Minor 5ss
34.5
-1.8
2.8
48.2
40.4
Minor BPS
51.7
0.13
1.9
71.31
45

Associated Gene:

Gene:
GRIA2
Ensembl Gene ID:
ENSAPLG00000012953
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020283
63155487 - 63244906
89420
ENSAPLT00000013623
63155487 - 63244338
88852
ENSAPLT00000046791
63155487 - 63242998
87512