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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_63219229_63219508_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
63219229 - 63219508
Intron Length:
280

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCTTCT
5'SS Class:
major
3'SS Sequence:
TTCACCTATATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TCATCTTCACCT
Flanking Amino Acid:
GVEIERALKQVQVEGLTGNI
Intron Amino Acid Position:
351

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.2
72.3
40.1
Major BPS
83
0.82
0.8
82
24.9
Major PPT
71
0.47
0.9
65.6
35
Minor 5ss
47
-0.3
2.9
68.1
42.9
Minor BPS
54.4
0.22
1.8
72.66
44.4

Associated Gene:

Gene:
GRIA2
Ensembl Gene ID:
ENSAPLG00000012953
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046791
63155487 - 63242998
87512
ENSAPLT00000020283
63155487 - 63244906
89420
ENSAPLT00000013623
63155487 - 63244338
88852