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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_63219614_63220343_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
63219614 - 63220343
Intron Length:
730

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTGA
5'SS Class:
strong_major
3'SS Sequence:
ATGTAATCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
ATCCATGTAATC
Flanking Amino Acid:
MELKSTGPRKIGYWSEVDKM
Intron Amino Acid Position:
386

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
76.9
34.6
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
68
0.41
1
64.1
42
Minor 5ss
39.6
-1.2
2.8
50.5
45.7
Minor BPS
44.6
-0.4
2
54.61
37.8

Associated Gene:

Gene:
GRIA2
Ensembl Gene ID:
ENSAPLG00000012953
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046791
63155487 - 63242998
87512
ENSAPLT00000020283
63155487 - 63244906
89420
ENSAPLT00000013623
63155487 - 63244338
88852