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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_63221831_63222333_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
63221831 - 63222333
Intron Length:
503

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTATTAT
U12 Branch Point Sequence:
TTTTCCTTTACA
Flanking Amino Acid:
NGMVGELVYGKADIAIAPLT
Intron Amino Acid Position:
492

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1
74.4
36
Major BPS
72.4
0.56
1.1
63.7
42.3
Major PPT
92.9
0.96
0.6
87.9
22.2
Minor 5ss
33.3
-1.9
2.8
33.8
41.1
Minor BPS
83.6
1.05
1.4
91.85
28.4

Associated Gene:

Gene:
GRIA2
Ensembl Gene ID:
ENSAPLG00000012953
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046791
63155487 - 63242998
87512
ENSAPLT00000020283
63155487 - 63244906
89420
ENSAPLT00000013623
63155487 - 63244338
88852