About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_63241542_63242962_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
63241542 - 63242962
Intron Length:
1421

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCACGTGAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTATGTTATTT
Flanking Amino Acid:
GIATPKGSSLRTPVNLAVLK
Intron Amino Acid Position:
764

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
68.5
38.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
64.3
0.32
1.1
64.9
35.6
Minor 5ss
25.2
-2.8
3.2
31.3
42.9
Minor BPS
49.1
0.01
2.3
75.79
41.6

Associated Gene:

Gene:
GRIA2
Ensembl Gene ID:
ENSAPLG00000012953
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020283
63155487 - 63244906
89420