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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_63242587_63242962_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
63242587 - 63242962
Intron Length:
376

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGCCCC
5'SS Class:
major
3'SS Sequence:
TTTCCACGTGAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTATGTTATTT
Flanking Amino Acid:
ECGSGGGDSKNPSKSCSIET
Intron Amino Acid Position:
803

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.3
61
42
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
64.3
0.32
1.1
64.9
35.6
Minor 5ss
34.6
-1.8
2.9
43.6
43.6
Minor BPS
49.1
0.01
2.3
75.79
41.6

Associated Gene:

Gene:
GRIA2
Ensembl Gene ID:
ENSAPLG00000012953
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046791
63155487 - 63242998
87512