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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_63243078_63244089_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
63243078 - 63244089
Intron Length:
1012

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
CACACATTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTGAT
U12 Branch Point Sequence:
TCTTCTCTAACT
Flanking Amino Acid:
ECGAKDSGSKEKTSALSLSN
Intron Amino Acid Position:
803

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1.3
73.2
39.3
Major BPS
74.7
0.61
0.9
63.4
35.6
Major PPT
65.4
0.35
0.9
58.3
36.9
Minor 5ss
36
-1.6
2.7
44.9
43
Minor BPS
72.8
0.79
1.6
88.42
36.8

Associated Gene:

Gene:
GRIA2
Ensembl Gene ID:
ENSAPLG00000012953
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020283
63155487 - 63244906
89420