About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_63329982_63330713_R

Intron Information:

Intron Rank:
154270
Intron Class:
major
Intron Phase:
Intron Coordinates:
63329982 - 63330713
Intron Length:
732

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCATTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
ACTAGCTCATCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
85
26.1
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
83.6
0.76
0.8
77.8
29.3
Minor 5ss
35.2
-1.7
2.7
39.2
40.5
Minor BPS
43.2
-0.5
2.1
53.66
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030487
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018588
63329251 - 63331199
1949