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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_63369022_63406008_R

Intron Information:

Intron Rank:
147902
Intron Class:
major
Intron Phase:
Intron Coordinates:
63369022 - 63406008
Intron Length:
36987

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
CCCTTTCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
GCTTGTTGTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.2
1.11
0.7
90.9
28.7
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
84.7
0.78
0.7
79.6
25.9
Minor 5ss
40.2
-1.1
3.1
58.6
45.9
Minor BPS
43.7
-0.4
2.1
60.63
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026855
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047900
63368742 - 63406472
37731