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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_63406155_63430151_R

Intron Information:

Intron Rank:
147900
Intron Class:
major
Intron Phase:
Intron Coordinates:
63406155 - 63430151
Intron Length:
23997

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGAAG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTGTTTATGACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
72
39.3
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
88.8
0.87
0.7
81
36.6
Minor 5ss
31
-2.2
3.2
38.7
46.6
Minor BPS
57.3
0.22
1.6
70.26
36.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026855
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037093
63405380 - 63430544
25165