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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_63517235_63521472_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
63517235 - 63521472
Intron Length:
4238

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAACAT
5'SS Class:
strong_major
3'SS Sequence:
TGCTTGGTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
TTGTTTTCAGTC
Flanking Amino Acid:
KMALFDFLLQIYNRLDRNCC
Intron Amino Acid Position:
405

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
0.9
74
36.4
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
71.9
0.49
1
69.1
41.8
Minor 5ss
33
-1.9
3.3
47.4
48
Minor BPS
49
-0.1
1.7
61.53
38.8

Associated Gene:

Gene:
GASK1B
Ensembl Gene ID:
ENSAPLG00000014115
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014710
63458151 - 63529899
71749