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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_63536101_63537289_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
63536101 - 63537289
Intron Length:
1189

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTTCTG
5'SS Class:
major
3'SS Sequence:
TCTCTGATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ACATGATTAATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.58
1.1
65.7
45.6
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
80.5
0.69
0.9
77.3
35.6
Minor 5ss
36.8
-1.5
3.2
50.2
46
Minor BPS
50.3
0.09
2
68.25
42.7

Associated Gene:

Gene:
TMEM144
Ensembl Gene ID:
ENSAPLG00000014201
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028202
63535890 - 63549050
13161