About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_63539916_63541393_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
63539916 - 63541393
Intron Length:
1478

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAACT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTTCTGAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TATTCATTGACG
Flanking Amino Acid:
NYIGAGLSLLSAVIFLFIKT
Intron Amino Acid Position:
211

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
80.5
31.7
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
66.9
0.38
1.7
80.4
31.6
Minor 5ss
35.5
-1.7
3.1
50.2
45.8
Minor BPS
67.9
0.42
1.7
73.2
39

Associated Gene:

Gene:
TMEM144
Ensembl Gene ID:
ENSAPLG00000014201
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031698
63529692 - 63549050
19359
ENSAPLT00000028202
63535890 - 63549050
13161
ENSAPLT00000014801
63535300 - 63548939
13640