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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_63541476_63542653_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
63541476 - 63542653
Intron Length:
1178

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTTAT
U12 Branch Point Sequence:
AAACTCTTATTT
Flanking Amino Acid:
LERTPLLRETSVNASEEISD
Intron Amino Acid Position:
239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.9
84.8
32.5
Major BPS
79.1
0.72
1
69.3
38.4
Major PPT
89.6
0.89
0.7
85.3
29.1
Minor 5ss
38.9
-1.3
2.8
53.8
42.8
Minor BPS
52.9
0.17
1.5
65.77
38.7

Associated Gene:

Gene:
TMEM144
Ensembl Gene ID:
ENSAPLG00000014201
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031698
63529692 - 63549050
19359
ENSAPLT00000028202
63535890 - 63549050
13161
ENSAPLT00000014801
63535300 - 63548939
13640