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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_63547749_63548855_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
63547749 - 63548855
Intron Length:
1107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCTTA
5'SS Class:
strong_major
3'SS Sequence:
CTTGACTGTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATGAC
U12 Branch Point Sequence:
TTTCTCTCCACT
Flanking Amino Acid:
WGVLVFKEIKGLKNYMLLSV
Intron Amino Acid Position:
394

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.73
1
76.9
34.6
Major BPS
74.7
0.62
1.1
65.7
41
Major PPT
70.9
0.47
1
61.6
44.2
Minor 5ss
47.5
-0.2
2.8
64.9
46.3
Minor BPS
56.3
0.28
2
81.4
40.1

Associated Gene:

Gene:
TMEM144
Ensembl Gene ID:
ENSAPLG00000014201
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028202
63535890 - 63549050
13161
ENSAPLT00000014801
63535300 - 63548939
13640
ENSAPLT00000031698
63529692 - 63549050
19359