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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_63621092_63625929_F

Intron Information:

Intron Rank:
142964
Intron Class:
major
Intron Phase:
Intron Coordinates:
63621092 - 63625929
Intron Length:
4838

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTAAGCAGC
5'SS Class:
major
3'SS Sequence:
ATATCCCCTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
TTTACTATATCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.2
0.45
1.1
61.8
42.9
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
75.5
0.57
0.9
71.3
34.9
Minor 5ss
42.3
-0.9
2.9
58.1
40.7
Minor BPS
53.7
0.09
1.9
72.08
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027044
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031357
63620915 - 63628590
7676