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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_63626118_63628480_F

Intron Information:

Intron Rank:
142965
Intron Class:
major
Intron Phase:
Intron Coordinates:
63626118 - 63628480
Intron Length:
2363

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATCCT
5'SS Class:
strong_major
3'SS Sequence:
ATTGTATTATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTTTAAGAAAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
77.8
36.9
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
73.6
0.53
1
71.7
42.4
Minor 5ss
36.2
-1.6
3.1
51.2
45.2
Minor BPS
46.6
-0.2
2
66.93
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027044
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031357
63620915 - 63628590
7676