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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_63646112_63659495_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
63646112 - 63659495
Intron Length:
13384

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTACGTGGT
5'SS Class:
major
3'SS Sequence:
TTTTTTTTATTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTTTTTTTATTA
Flanking Amino Acid:
CGNHADEDNCEDNNGWSLQF
Intron Amino Acid Position:
25

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1
69
41.9
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
87.7
0.85
0.7
90
24.6
Minor 5ss
33.5
-1.9
3.5
46.5
44.1
Minor BPS
67.9
0.56
1.5
78.16
33

Associated Gene:

Gene:
RXFP1
Ensembl Gene ID:
ENSAPLG00000014265
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014860
63646039 - 63679703
33665