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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_63667611_63669295_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
63667611 - 63669295
Intron Length:
1685

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTAAC
5'SS Class:
major
3'SS Sequence:
TTTCTCCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTCAAGCAACA
Flanking Amino Acid:
TFFSCNTLTVLVMRRNKISS
Intron Amino Acid Position:
216

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1.1
74.7
35.4
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
89.2
0.88
0.7
81.3
30.7
Minor 5ss
38.9
-1.2
2.8
55.7
41.6
Minor BPS
42.3
-0.5
2.4
63.86
41.7

Associated Gene:

Gene:
RXFP1
Ensembl Gene ID:
ENSAPLG00000014265
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014860
63646039 - 63679703
33665