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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_63667611_63670182_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
63667611 - 63670182
Intron Length:
2572

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTAAC
5'SS Class:
major
3'SS Sequence:
GCTGTTTCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
GATATCCCACCT
Flanking Amino Acid:
TFFSCNTLTVLDLASNKIES
Intron Amino Acid Position:
171

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1.1
74.7
35.4
Major BPS
84.6
0.86
1
74
41.2
Major PPT
79.2
0.66
0.9
73
37.4
Minor 5ss
38.9
-1.2
2.8
55.7
41.6
Minor BPS
42
-0.5
2
59.75
42.9

Associated Gene:

Gene:
RXFP1
Ensembl Gene ID:
ENSAPLG00000014265
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037334
63659558 - 63679703
20146