Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_63673791_63674007_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

63673791 - 63674007

Intron Length:

217

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAT|GTAAGTAGT

5'SS Class:

strong_major

3'SS Sequence:

TTCTCGCATTTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CATCTAT

U12 Branch Point Sequence:

TTTCTCGCATTT

Flanking Amino Acid:

MFRPLRNLSHIYFKKFQYCG

Intron Amino Acid Position:

312

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.3

0.83

83.8

34.5

Major BPS

53.7

0.09

1.3

54.1

41.5

Major PPT

72.3

0.5

0.9

70.4

35.3

Minor 5ss

39.9

-1.1

2.9

56.1

41.4

Minor BPS

43.8

-0.3

2.3

68.97

42.5

Associated Gene:

Gene:

RXFP1

Ensembl Gene ID:

ENSAPLG00000014265

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037334

63659558 - 63679703

20146

ENSAPLT00000014860

63646039 - 63679703

33665