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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_63682275_63683449_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
63682275 - 63683449
Intron Length:
1175

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACGCGG
5'SS Class:
major
3'SS Sequence:
CTTGTTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTAAAT
U12 Branch Point Sequence:
GATTCGTTAAAT
Flanking Amino Acid:
LWSRCPPGATARQCFHALKL
Intron Amino Acid Position:
12

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.2
55.2
49
Major BPS
64.6
0.36
1.3
73.3
39.1
Major PPT
88.7
0.87
0.7
84
31
Minor 5ss
35.7
-1.6
3.3
47.7
47.8
Minor BPS
60.5
0.41
2.2
79.66
41.6

Associated Gene:

Gene:
ETFDH
Ensembl Gene ID:
ENSAPLG00000014311
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025678
63681519 - 63699986
18468