About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_63685488_63685778_F


Intron Information:

Intron Rank:
4

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
63685488 - 63685778

Intron Length:
291

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CAG|GTAAAGTTT

5'SS Class:
strong_major

3'SS Sequence:
TCTTTTTGCCTAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TGTATAT

U12 Branch Point Sequence:
TTGTGTGTATAT

Flanking Amino Acid:
KSRIPVPILPGLPMVNHGNY

Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
83.5
0.79
0.9
81.9
32.1

Major BPS
64.1
0.35
1.2
61
45.5

Major PPT
77.6
0.62
0.9
72.8
37.5

Minor 5ss
42
-0.9
3.5
64.1
47.4

Minor BPS
41.1
-0.6
2.5
64.24
46.5

Associated Gene:

Gene:
ETFDH

Ensembl Gene ID:

Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

63683450 - 63699986
16537

63681519 - 63699986
18468