About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_63685898_63686238_F


Intron Information:

Intron Rank:
5

Intron Class:
major-like

Intron Phase:
0

Intron Coordinates:
63685898 - 63686238

Intron Length:
341

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
GAG|GTAATAATG

5'SS Class:
strong_major

3'SS Sequence:
AACATTTCCAAAG|G

3'SS Class:
degenerate_major

U2 Branch Point Sequence:
TTTTAAA

U12 Branch Point Sequence:
TTCTTTTTAAAC

Flanking Amino Acid:
ELYPGYAAAEVLFHEDGSVK

Intron Amino Acid Position:
151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
82.3
0.76
1
77.4
37.4

Major BPS
90.4
1
0.7
90.2
19.3

Major PPT
56.9
0.16
1.1
56
38.2

Minor 5ss
37.2
-1.5
3
49.1
46.7

Minor BPS
69.5
0.59
1.3
74.65
36.2

Associated Gene:

Gene:
ETFDH

Ensembl Gene ID:

Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

63681519 - 63699986
18468

63683450 - 63699986
16537