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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_63698313_63698636_F

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
63698313 - 63698636
Intron Length:
324

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTTCA
5'SS Class:
strong_major
3'SS Sequence:
AAAATGTATTTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTATTAAAA
Flanking Amino Acid:
GKEPWTLKHPGPDFAQLKPA
Intron Amino Acid Position:
438

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1.1
77.7
33.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
56.5
0.15
1.1
52.3
46.1
Minor 5ss
46
-0.4
2.5
59.7
44.7
Minor BPS
63.9
0.43
1.7
75.11
35.4

Associated Gene:

Gene:
ETFDH
Ensembl Gene ID:
ENSAPLG00000014311
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025678
63681519 - 63699986
18468
ENSAPLT00000014952
63683450 - 63699986
16537